class: center, middle, inverse, title-slide # MetaData is sexy! ## ⚔
### Rainer M Krug ### University Zurich, IEEU ### 18.06.2019 (updated: 2019-06-18) --- class: center, middle, inverse <style type="text/css"> /* custom.css */ .title-slide.remark-slide-content:before{ position: absolute; bottom: 0; left: 0; content:url(https://zenodo.org/badge/DOI/10.5281/zenodo.3246326.svg); height:60px; } .alert { color: #FF0000; text-align: center; font-size: xx-large; float: middle; } .dt { font-size: x-small; float: left; bottom: 0; }] </style> # MetaData --- layout: true class: inverse, animated, fadeIn --- class: center, middle, inverse <img src="./fig/metadata-1200dpi.png" style="width: 100%" /> .dt[ [icanbareleydraw](http://www.icanbarelydraw.com/comic/wp-content/uploads/2013/06/metadata-1200dpi.png) ] --- class: center, middle # Data about Data --- class: center, middle <img src="./fig/5141328136_16d8f73ee7_b.jpg" style="width: 100%" /> .dt[ [randylane](http://randylane.com/wp-content/uploads/2014/09/5141328136_16d8f73ee7_b.jpg) ] --- class: center, middle <img src="./fig/istockphoto-616093188-612x612.jpg" style="width: 100%" /> .dt[ [istockphoto](https://media.istockphoto.com/photos/woman-scientist-screaming-picture-id616093188?k=6&m=616093188&s=612x612&w=0&h=1nrZy_8hdnd0BxG1_q60kBbFYmCrrPkyDe_LvKurKjU=) ] --- class: center, middle <img src="./fig/maxresdefault.jpg" style="width: 100%" /> .dt[ [https://i.ytimg.com/vi/YsUyzkjOY_c/maxresdefault.jpg](https://i.ytimg.com/vi/YsUyzkjOY_c/maxresdefault.jpg) ] --- class: center, middle Change to MetaData in your mind <img src="./fig/taxes.jpg" style="width: 70%" /> .dt[ [nomorewallstreet](http://nomorewallstreet.com/wp-content/uploads/2014/10/taxes.jpg)] --- class: center, middle <img src="./fig/0-main-filing-taxes-romanr-shutterstock_583001296-848x477.jpg" style="width: 100%" /> .dt[ [gobankingrates](https://cdn.gobankingrates.com/wp-content/uploads/2017/09/0-main-filing-taxes-romanr-shutterstock_583001296-848x477.jpg) ] --- class: center, middle Change to MetaData in your mind <img src="./fig/8-student-faqs-about-taxes.jpg" style="width: 100%" /> .dt[ [nerdwallet](http://assets.nerdwallet.com/blog/wp-content/uploads/2015/10/8-student-faqs-about-taxes.jpg) ] --- class: center, middle <img src="./fig/FAIR_EN.png" style="width: 70%" /> .dt[ [ogsl](https://ogsl.ca/sites/default/files/FAIR_EN.png) ] --- class: center, middle <img src="./fig/happy-scientists.jpg" style="width: 100%" /> .dt[ [edgefoscholars](https://edgeforscholars.org/wp-content/uploads/2017/04/happy-scientists.jpg) ] --- # Metadata is complex and divers <img src="./fig/5141328136_16d8f73ee7_b.jpg" style="width: 90%" /> .dt[ [randylane](http://randylane.com/wp-content/uploads/2014/09/5141328136_16d8f73ee7_b.jpg)] --- # Metadata is complex and divers ==> Metadata Schemes bring structure -- <img src="./fig/image028.gif" style="width: 35%" /> -- ==> Metadata Schemes are complex .dt[ [oasis-open](http://docs.oasis-open.org/election/eml/v5.0/cs01/EML-Schema-Descriptions-v5.0_files/image028.gif)] --- class: inverse # Introducing: Domain Specific Metadata Schemes (dmdScheme) -- - Specific for requirements of domain -- - Buy-in from scientists through **participation in development of the dmdScheme** -- - Poisot et al., 2019: Metadata schemes for scientific domains, subdomains, research types, ... Poisot, T., Bruneau, A., Gonzalez, A., Gravel, D., Peres-Neto, P., 2019. Ecological Data Should Not Be So Hard to Find and Reuse. Trends in Ecology & Evolution 0. https://doi.org/10.1016/j.tree.2019.04.005 --- class: inverse <img src="./fig/happy-scientists.jpg" style="width: 100%" /> .dt[ [odgeforscholars](https://edgeforscholars.org/wp-content/uploads/2017/04/happy-scientists.jpg) --- class: inverse # Entering Metadata <img src="./fig/0-main-filing-taxes-romanr-shutterstock_583001296-848x477.jpg" style="width: 100%" /> .dt[ [gobankingrates](https://cdn.gobankingrates.com/wp-content/uploads/2017/09/0-main-filing-taxes-romanr-shutterstock_583001296-848x477.jpg)] --- class: inverse # Data Format -- - machine readable - human readable -- - XML -- <img src="./fig/dmdScheme_xml.png" style="width: 100%" /> --- # Introducing: R package dmdScheme -- Entering Metadata in spreadsheet -- <img src="./fig/emeScheme_Experiment.png" style="width: 100%" /> --- # Introducing: R package dmdScheme Entering Metadata in spreadsheet <img src="./fig/emeScheme_Species.png" style="width: 100%" /> --- # Introducing: R package dmdScheme -- Validate Spreadsheet -- ```r validate_report("SPREADSHEET.xlsx") ``` -- <img src="./fig/dmdScheme_validation.png" style="width: 100%" /> --- # Introducing: R package dmdScheme Validate Spreadsheet ```r validate_report("SPREADSHEET.xlsx") ``` <img src="./fig/dmdScheme_validation_details.png" style="width= 100%" /> --- # Introducing: R package dmdScheme -- Export Spreadsheet to xml -- ```r dmdScheme_to_xml( read_from_excel("SPREADSHEET.xlsx"), file = "metadata.xml" ) ``` -- <img src="./fig/dmdScheme_xml.png" style="width: 100%" /> --- class: center, middle <img src="https://edgeforscholars.org/wp-content/uploads/2017/04/happy-scientists.jpg" style="width: 100%" /> --- class: center, middle <img src="https://xkcd.com/927/ https://imgs.xkcd.com/comics/standards.png" style="width: 100%" /> --- class: inverse # Competing or Not? -- - Not! - dmdSchemes are subsets of other schemes ([Darwin Core](http://rs.tdwg.org/dwc/), [Ecological Metadata Language ](https://knb.ecoinformatics.org/external/emlparser/docs/eml-2.1.1/index.html)) -- # Ontologies -- .alert[ You don't want to go there! ] -- .alert[ Not now! ] -- .alert[ Trust me! ] -- # Simply linking Metadata Properties ---